Basic Information
VIS ID
TVIS30007673
Fusion event
HIV-MIR217HG integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p16.1
Reference genome
GRCh37/hg19
Start
56238718/56011583 (Hg38)
End
56238718/56011583 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA2S
Target gene
MIR217HG
Nearest miRNA
hsa-mir-1301/Upstream/10788; hsa-mir-10b/Downstream/4375779;
Nearest TSS
ENST00000437798/Upstream/59425; ENST00000407595/Downstream/35743;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/87770, chr2-CpG: 162/Downstream/172147
Upstream sequence
ttctacaaaatgagggtaataatagtgcatatctcagaaagttaagatcagtgctgtgtgtggcacagtgcccggaacatagaaagctctcaataagtgt
Downstream sequence
tatctattattTTTATTATTGTAATTTTCTGCCTACTTTTCTGAAGTATTTTCTCCGGTATGTCTTAATTTACTCTGCAGCATGTAGTAATCACATTCTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate