Basic Information
VIS ID
TVIS30007675
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p16.1
Reference genome
GRCh37/hg19
Start
58064779/57837644 (Hg38)
End
58064779/57837644 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1301/Upstream/1836849; hsa-mir-10b/Downstream/2549718;
Nearest TSS
ENST00000437798/Upstream/1651874; ENST00000463222/Downstream/70007;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1652240, chr2-CpG: 81/Downstream/208863
Nearby gene
VRK2(No orient, 70007)
Upstream sequence
gtaataactttatagtggaaaatccagcagacatcaccttaagagcactctaataagatatatcaatatgacgtatctcctgatgttataaatgagaagg
Downstream sequence
gtgcatcatttctgtagtatccttgtgaaacatgcataaccttaattatgagaaataaatcaaacaatataaatcaagggttattctactaaagagctga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate