Basic Information
VIS ID
TVIS30007677
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p16.1
Reference genome
GRCh37/hg19
Start
59758960/59531825 (Hg38)
End
59758960/59531825 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1301/Upstream/3531030; hsa-mir-10b/Downstream/855537;
Nearest TSS
ENST00000437798/Upstream/96612; ENST00000444873/Downstream/201506;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1102848, chr2-CpG: 103/Downstream/928862
Upstream sequence
ccacactcagctaatttttgtatttttagtagacacggggtttcaccatgttggccaggatggtctcaatttcctgacctcgtgatccgcccacctcagc
Downstream sequence
ctccaaagtgctgggattacaggcgtgagccactgctcccggccCCATTTATGGAATTCTTAAGAAATGTAGTCTATCAATCAGGATGGCTATGGTTATG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate