Basic Information
VIS ID
TVIS30007686
Fusion event
HIV-PELI1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p14
Reference genome
GRCh37/hg19
Start
64360447/64133313 (Hg38)
End
64360447/64133313 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
PELI1
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-374b-5p ; hsa-mir-340-5p ; hsa-mir-21-5p ; hsa-mir-296-3p ; hsa-mir-106a-5p ; hsa-mir-17-5p ; hsa-mir-374a-5p ; hsa-mir-578 ; hsa-mir-6794-3p ; hsa-mir-668-3p ; hsa-mir-6845-3p ; hsa-mir-4639-3p ; hsa-mir-224-5p ; hsa-mir-548e-5p
Nearest miRNA
hsa-mir-1301/Upstream/1927396; hsa-mir-10b/Downstream/207434;
Nearest TSS
ENST00000437798/Upstream/45067; ENST00000438115/Downstream/9926;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/113554, chr2-CpG: 112/Downstream/10441
Upstream sequence
TTTCTTCAATCATTTGTTTTAACATCACTAAATGAAACATAAACATGCTATCCCTGACTACAAAGAATTCTTAAGCTCATACAGTGAGTTTCAACCCTGA
Downstream sequence
GCACTCAATGTGAAGAGACAGTATAGATAGAAGAGAGAGACTTTCTATAGGCAAATTATTtaaagtcatagaatcctggagctggaagagaccCAATATA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate