VISDB Viral Integration Site DataBase

VIS ID

TVIS30007687

Fusion event

HIV-SERTAD2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

p14

Reference genome

Start

End

64869038/64641904 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-210-3p ; hsa-mir-155-5p ; hsa-mir-151a-5p ; hsa-mir-340-5p ; hsa-mir-375 ; hsa-mir-124-3p ; hsa-mir-183-5p ; hsa-mir-7-5p ; hsa-mir-98-5p ; hsa-mir-93-5p ; hsa-mir-33a-5p ; hsa-mir-296-3p ; hsa-mir-6875-3p ; hsa-mir-324-5p ; hsa-mir-1277-5p ; hsa-mir-5011-5p ; hsa-mir-190a-3p ; hsa-mir-4778-3p ; hsa-mir-205-5p ; hsa-mir-6781-5p ; hsa-mir-4532 ; hsa-mir-6850-3p ; hsa-mir-1247-3p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-4799-5p ; hsa-mir-4662a-3p ; hsa-mir-5692a ; hsa-mir-4531 ; hsa-mir-3911 ; hsa-mir-7847-3p ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-7153-5p ; hsa-mir-146b-5p ; hsa-mir-146a-5p ; hsa-mir-4302 ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-3681-3p ; hsa-mir-92b-3p ; hsa-mir-32-5p ; hsa-mir-92a-3p ; hsa-mir-134-5p ; hsa-mir-3118 ; hsa-mir-3136-5p ; hsa-mir-31-5p ; hsa-mir-4427 ; hsa-mir-4439 ; hsa-mir-4468 ; hsa-mir-4513 ; hsa-mir-6809-5p ; hsa-mir-6855-3p ; hsa-mir-6857-3p ; hsa-mir-7151-5p ; hsa-mir-7855-5p ; hsa-mir-2681-5p ; hsa-mir-616-3p ; hsa-mir-924

Nearest miRNA

hsa-mir-1301/Upstream/116339; hsa-mir-10b/Downstream/1716345;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/32273, chr2-CpG: 162/Downstream/11281

Nearest cancer related gene

SERTAD2(OG, No orient, 0)

Upstream sequence

CAGCTGAGAAGCTCTTCTGTGAGCGGCTCTCCCATCCTTCACttctcaaccacggacaagccttaggttcacctggaggcctgataagcacaggccgttg

Downstream sequence

ggccccacctcccatatttctctttcagcatgtctggggaggagccctcaaatcagcatttccaacaaactttcgggtgatgctggtctgggaacctcac