Basic Information
VIS ID
TVIS30007690
Fusion event
HIV-ARHGAP25 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
68963552/68736420 (Hg38)
End
68963552/68736420 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2S ; FRA2E
Target gene
ARHGAP25
Nearest miRNA
hsa-mir-1301/Upstream/2378092; hsa-mir-10b/Downstream/367262;
Nearest TSS
ENST00000437798/Upstream/1043; ENST00000473986/Downstream/38381;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/80978, chr2-CpG: 84/Downstream/276531
Upstream sequence
CAAGCTGTGAATGattgtatgctgaggtcagttcagagaaaaggtaatgttcatacctcttacaaaagcaagagattttcctcctaactatcattgatac
Downstream sequence
aaatgtacttggctaatgctcAATCTATGTCATACAAATTATATGGTTCTGTTCCTTTGAAAGTGTCCTGCTTCTACATAAATAAGGTCATTCTGCCTTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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