Basic Information
VIS ID
TVIS30007696
Fusion event
HIV-PCBP1-AS1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
70309933/70082801 (Hg38)
End
70309933/70082801 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA2S ; FRA2E
Target gene
PCBP1-AS1
Nearest miRNA
hsa-mir-1301/Upstream/979046; hsa-mir-10b/Downstream/170117;
Nearest TSS
ENST00000437798/Upstream/120536; ENST00000303577/Downstream/4653;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/121207, chr2-CpG: 164/Downstream/3267
Upstream sequence
ctctgtctcaaaaataaatacataaattaatttaacttaaaaatcagccggcatggtgggcacacacctgcagtcccagttactgaggaggctgaggtgg
Downstream sequence
gaggattgcttgagcctgggggatagaggtggcagtgagctacgatggagccactacactccagcatgggtgacagagcaagaccttctctcaaaaaata
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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