Basic Information
VIS ID
TVIS30007698
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
70354844/70127712 (Hg38)
End
70354844/70127712 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA2S ; FRA2E
Nearest miRNA
hsa-mir-1301/Upstream/1023957; hsa-mir-10b/Downstream/125206;
Nearest TSS
ENST00000437798/Upstream/2395; ENST00000422380/Downstream/54283;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/2313, chr2-CpG: 104/Downstream/14295
Nearby gene
LINC01816(No orient, 2396)
Upstream sequence
ATTTGGTGGTTATTGAATTAGTGACATTGCAGTATCACTGTTAGGGTGACCTCCATTCCCATCAGATGATGTGGCTTGAAGCTATTCCAAACGGGCaagg
Downstream sequence
ttaaaaaacaataggcaaactgggaaaacctatttgcaacacacatgaaaacaaaatgttgttattcttgctatgtaggaagtgcttgcaaataaataag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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