VISDB Viral Integration Site DataBase

VIS ID

TVIS30007704

Fusion event

HIV-MTHFD2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

p13.1

Reference genome

Start

End

74428704/74201577 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

FRA2S ; FRA2E

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-155-5p ; hsa-mir-16-5p ; hsa-mir-421 ; hsa-mir-30e-5p ; hsa-mir-29c-3p ; hsa-mir-30d-5p ; hsa-mir-30a-3p ; hsa-mir-30d-3p ; hsa-mir-30e-3p ; hsa-mir-559 ; hsa-mir-548b-5p ; hsa-mir-548a-5p ; hsa-mir-548c-5p ; hsa-mir-548d-5p ; hsa-mir-548j-5p ; hsa-mir-548k ; hsa-mir-548l ; hsa-mir-548f-5p ; hsa-mir-548g-5p ; hsa-mir-548h-5p ; hsa-mir-548p ; hsa-mir-548i ; hsa-mir-548w ; hsa-mir-548x-5p ; hsa-mir-548y ; hsa-mir-548o-5p ; hsa-mir-548ab ; hsa-mir-548ad-5p ; hsa-mir-548ae-5p ; hsa-mir-548aj-5p ; hsa-mir-548ak ; hsa-mir-548am-5p ; hsa-mir-4670-3p ; hsa-mir-548ap-5p ; hsa-mir-548aq-5p ; hsa-mir-548ar-5p ; hsa-mir-548as-5p ; hsa-mir-548au-5p ; hsa-mir-548av-5p ; hsa-mir-548ay-5p ; hsa-mir-8054 ; hsa-mir-548bb-5p ; hsa-mir-186-5p ; hsa-mir-568 ; hsa-mir-3668 ; hsa-mir-4477a ; hsa-mir-9-5p ; hsa-mir-548n ; hsa-mir-4257 ; hsa-mir-2467-3p ; hsa-mir-302c-5p ; hsa-mir-500a-5p ; hsa-mir-501-5p ; hsa-mir-5584-3p ; hsa-mir-576-3p ; hsa-mir-7109-5p ; hsa-mir-4291 ; hsa-mir-4472 ; hsa-mir-4447 ; hsa-mir-92a-2-5p ; hsa-mir-6885-5p ; hsa-mir-328-5p ; hsa-mir-6887-5p ; hsa-mir-6795-5p ; hsa-mir-625-5p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-6134 ; hsa-mir-1827 ; hsa-mir-4459 ; hsa-mir-4433a-3p ; hsa-mir-4768-3p ; hsa-mir-761 ; hsa-mir-3619-5p ; hsa-mir-214-3p ; hsa-mir-922 ; hsa-mir-3617-3p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-34a-3p ; hsa-mir-4643 ; hsa-mir-8485 ; hsa-mir-6844 ; hsa-mir-3165 ; hsa-mir-6880-5p ; hsa-mir-4277 ; hsa-mir-8071 ; hsa-mir-382-5p ; hsa-mir-495-5p ; hsa-mir-1910-5p ; hsa-mir-455-3p ; hsa-mir-1324 ; hsa-mir-5683 ; hsa-mir-548as-3p ; hsa-mir-500a-3p ; hsa-mir-6771-5p ; hsa-mir-425-3p ; hsa-mir-7977 ; hsa-mir-3622b-5p ; hsa-mir-6804-3p ; hsa-mir-20b-3p ; hsa-mir-6746-5p ; hsa-mir-502-3p ; hsa-mir-501-3p ; hsa-mir-2114-5p ; hsa-mir-5588-3p ; hsa-mir-4314 ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-6735-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-3192-5p ; hsa-mir-4646-5p ; hsa-mir-204-3p ; hsa-mir-330-5p ; hsa-mir-326 ; hsa-mir-2276-5p ; hsa-mir-4650-5p ; hsa-mir-4687-5p

Nearest miRNA

hsa-mir-1285-2/Upstream/3948572; hsa-mir-10b/Downstream/889235;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/2281, chr2-CpG: 57/Downstream/190049

Upstream sequence

ttgtgagtaactgggaccacaggagcataccaccatgcctggctaattttttttttttttaacttttagtagagatggggtctcaccatgttgcccacgc

Downstream sequence

tagtcttgaacttggcctcccaaaatgctgggattacaaggcctgtgccaccatgcccagccCTGGGAATTTTTTCTAAACACATCTGTGAATGCATTTA