Basic Information
VIS ID
TVIS30007711
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p12
Reference genome
GRCh37/hg19
Start
81498991/81271867 (Hg38)
End
81498991/81271867 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1285-2/Upstream/1405284; hsa-mir-10b/Downstream/4511733;
Nearest TSS
ENST00000437798/Upstream/401677; ENST00000448431/Downstream/195079;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/76459, chr2-CpG: 32/Downstream/195331
Nearby gene
LINC01815(No orient, 189492)
Upstream sequence
cctacaaaggacatgaactcatcattttttatggctgcatagtattccatggtgtatatatgccacattttcttaattcagtctatcattgttggacgtt
Downstream sequence
tggcttggttccaagtctttgttattgtgaatagtgccgcaataaacatctgtgtgcatgtgtctttatagcagcatggaaaaccagtgttattataatt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate