VISDB Viral Integration Site DataBase

VIS ID

TVIS30007718

Fusion event

HIV-PTCD3 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

p11.2

Reference genome

Start

End

86347157/86120034 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

FRA2S ; FRA2L

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-26b-5p ; hsa-mir-361-5p ; hsa-mir-34a-5p ; hsa-mir-203b-3p ; hsa-mir-6792-3p ; hsa-mir-7158-3p ; hsa-mir-4691-5p ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-6778-3p ; hsa-mir-4680-5p ; hsa-mir-4635 ; hsa-mir-766-3p ; hsa-mir-6849-3p ; hsa-mir-642a-5p ; hsa-mir-4284 ; hsa-mir-6845-3p ; hsa-mir-4469 ; hsa-mir-1304-3p ; hsa-mir-645 ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-6890-3p ; hsa-mir-5571-3p ; hsa-mir-4772-3p ; hsa-mir-4705 ; hsa-mir-5698 ; hsa-mir-744-3p ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-143-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-3194-3p ; hsa-mir-6499-3p ; hsa-mir-367-5p ; hsa-mir-1267 ; hsa-mir-1251-3p ; hsa-mir-129-5p ; hsa-mir-1304-5p ; hsa-mir-29b-1-5p ; hsa-mir-377-5p ; hsa-mir-582-3p ; hsa-mir-6086 ; hsa-mir-655-5p ; hsa-mir-6885-3p

Nearest miRNA

hsa-mir-1285-2/Upstream/336357; hsa-mir-10b/Downstream/72992;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/13507, chr2-CpG: 81/Downstream/74911

Upstream sequence

CAGAAGCAGCTGGCATTAAGTTTTTAGAATCTAGAGTGCTATTTGGTGATTTAGAATAAACATGGAAGTGGTGGAAACTGGACTGAATCATTATACACTT

Downstream sequence

GAACACAAGAAACATTTGCAGAAAGCTATGTTTGAGAATTTTGGTGTGTGGCTTGGTACAGCATCAGATGTATGGCTGAGTGATGGCAATAGATTGTAAT