Basic Information
VIS ID
TVIS30007720
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
86723420/86496297 (Hg38)
End
86723420/86496297 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA2S ; FRA2L
Nearest miRNA
hsa-mir-1285-2/Upstream/303189; hsa-mir-10b/Downstream/698489;
Nearest TSS
ENST00000437798/Upstream/7120; ENST00000597638/Downstream/16238;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/53973, chr2-CpG: 60/Downstream/66554
Nearby gene
KDM3A(No orient, 3581)
Nearest cancer related gene
KDM3A(TSG, No orient, 3581)
Upstream sequence
ttgtatctaaattgtcagcatatataggtagatcatgtttttttatcccttccatctgccttttaattggagtttaatacatttagagtaattagatgac
Downstream sequence
tgacttctgctttttatctggtatgttttatctggtttttgttacttaaaatcccaccattactgctttatttcatatttagttgaaactttgtactgta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate