Basic Information
VIS ID
TVIS30007739
Fusion event
HIV-CHST10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
101031038/100414576 (Hg38)
End
101031038/100414576 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2S ; FRA2A
Target gene
CHST10
miRNAs that regulate target gene
hsa-mir-143-3p
Nearest miRNA
hsa-mir-1285-2/Upstream/3616223; hsa-mir-10b/Downstream/894874;
Nearest TSS
ENST00000437798/Upstream/91843; ENST00000376865/Downstream/1269;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/91979, chr2-CpG: 78/Downstream/2568
Nearest cancer related gene
CHST10(TSG, No orient, 0)
Upstream sequence
CACCATCAACCCTGAGCACATTCTGAACTACAATGCATTACCCTATCAATAGAATCATTAAATTACAACTCCATAATGCAAAGTGTGGCATATGAATTTA
Downstream sequence
TACTATAAAGTTCTATTGCATGTCACTGAGACTTTCAAATTCATAGTAAAGGTTTCTCTCAATCTGCGTACAGAAATTTCCTTTGTCTTCTCTGTTGTCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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