Basic Information
VIS ID
TVIS30007743
Fusion event
HIV-LINC01102 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
105064464/104448006 (Hg38)
End
105064464/104448006 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA2S
Target gene
LINC01102
Nearest miRNA
hsa-mir-1285-2/Upstream/2015640; hsa-mir-10b/Downstream/4693484;
Nearest TSS
ENST00000437798/Upstream/13628; ENST00000438566/Downstream/62503;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1711051, chr2-CpG: 44/Downstream/211124
Upstream sequence
AAGCCTTGACTATTTTTTAAAAAAAATTCCCTAAAACAGAGAAATATACAAATGTGTATGAAAAATGGCCTCTTCTTTGATTAAAAAAGGAAAGAAAAGG
Downstream sequence
CAAGATATGTGAACACTAATGCCCCCAGGTGATGGGAGTAGGAAGTGAGTTAAAGAGCACTATTTTTAGGTATTAAATATTCAAAAGTAAAAAAAAAAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate