Basic Information
VIS ID
TVIS30007748
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q12.2
Reference genome
GRCh37/hg19
Start
107263323/106646867 (Hg38)
End
107263323/106646867 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1285-2/Upstream/4214501; hsa-mir-10b/Downstream/2494623;
Nearest TSS
ENST00000437798/Upstream/108788; ENST00000425419/Downstream/183212;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/159270, chr2-CpG: 39/Downstream/196200
Nearby gene
ST6GAL2(No orient, 154733)
Upstream sequence
ATGATGTGATTAGATGCTCCATTAGCATACACCTCAGTACACTTTTCTCAGAGCACGCTCCCTCTATGCATGTTAATTTCTTGTAAATGTCAGTGAGTCA
Downstream sequence
GAGGGTGTTGATAAACATCACTACTATTAGTTATTTAGCTATCTGGATCACAGTTTCAATTGCTCCTGACCTTGGCTTGGAAATCCACAAAGCACTTCTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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