Basic Information
VIS ID
TVIS30007749
Fusion event
HIV-RANBP2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q13
Reference genome
GRCh37/hg19
Start
109400390/108783934 (Hg38)
End
109400390/108783934 (Hg38)
Orient
+
Location type
UTR3
Fragile sites / regions
FRA2S
Target gene
RANBP2
miRNAs that regulate target gene
hsa-mir-708-5p ; hsa-mir-106b-3p ; hsa-mir-421 ; hsa-mir-423-3p ; hsa-mir-186-5p ; hsa-mir-125b-5p ; hsa-let-7g-5p ; hsa-mir-92a-3p ; hsa-let-7e-5p ; hsa-let-7a-5p ; hsa-mir-7152-5p ; hsa-mir-3074-5p ; hsa-mir-1200 ; hsa-mir-378a-5p ; hsa-mir-539-5p ; hsa-mir-3124-3p ; hsa-mir-3140-5p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-3973 ; hsa-mir-551b-5p ; hsa-mir-6507-3p ; hsa-mir-4311 ; hsa-mir-4439 ; hsa-mir-943 ; hsa-mir-6826-3p ; hsa-mir-3136-5p ; hsa-mir-4667-3p ; hsa-mir-1470 ; hsa-mir-6795-3p ; hsa-mir-6887-3p ; hsa-mir-5003-5p ; hsa-mir-542-3p ; hsa-mir-4504 ; hsa-mir-642b-3p ; hsa-mir-642a-3p ; hsa-mir-4501 ; hsa-mir-8087 ; hsa-mir-7161-5p ; hsa-mir-548u
Nearest miRNA
hsa-mir-1285-2/Upstream/6351568; hsa-mir-10b/Downstream/357556;
Nearest TSS
ENST00000437798/Upstream/32383; ENST00000470608/Downstream/2823;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/63720, chr2-CpG: 73/Downstream/2517
Upstream sequence
ATCATTTGGTTCTCCCAAAGGGTCTGTTTGTCGAAGAATAACTATCACAGAATGTGGACAGATATAAAATCATTGTTGTTCATAGAAAATTTCATCTGTA
Downstream sequence
TAAGCAGTTGGATTGAAGCTTAGCTATTACAATTTGATAGTTATGTTCAGCTTTTGAAAATGGACGTTTCCGATTTACAAATGTAAAATTGCAGCTTATA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate