VISDB Viral Integration Site DataBase

VIS ID

TVIS30007752

Fusion event

HIV-BUB1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

q13

Reference genome

Start

End

111424781/110667204 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

FRA2S ; FRA2B

Target gene

miRNAs that regulate target gene

hsa-mir-450a-1-3p ; hsa-mir-196b-5p ; hsa-mir-186-5p ; hsa-mir-196a-5p ; hsa-mir-10b-3p ; hsa-mir-3678-3p ; hsa-mir-1273h-3p ; hsa-mir-8053 ; hsa-mir-644a ; hsa-mir-6717-5p ; hsa-mir-298 ; hsa-mir-145-3p ; hsa-mir-4302 ; hsa-mir-769-3p ; hsa-mir-450b-3p ; hsa-mir-638 ; hsa-mir-4713-3p ; hsa-mir-4735-5p ; hsa-mir-3680-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-450b-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-106a-3p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6878-5p ; hsa-mir-4714-3p ; hsa-mir-6871-5p ; hsa-mir-4282 ; hsa-mir-670-3p ; hsa-mir-340-5p ; hsa-mir-503-3p ; hsa-mir-6861-5p ; hsa-mir-186-3p ; hsa-mir-885-5p ; hsa-mir-3159 ; hsa-mir-551b-5p ; hsa-mir-3187-3p ; hsa-mir-653-3p ; hsa-mir-6847-3p ; hsa-mir-4529-5p ; hsa-mir-539-5p ; hsa-mir-3190-5p ; hsa-mir-4756-3p ; hsa-mir-3919 ; hsa-mir-548o-3p ; hsa-mir-1323 ; hsa-mir-5680 ; hsa-mir-193b-3p ; hsa-mir-193a-3p ; hsa-mir-497-3p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-4790-3p ; hsa-mir-873-5p ; hsa-mir-574-5p ; hsa-mir-4455 ; hsa-mir-466 ; hsa-mir-4672 ; hsa-mir-3941 ; hsa-mir-6867-5p ; hsa-mir-6768-5p ; hsa-mir-595

Nearest miRNA

hsa-mir-1285-2/Upstream/382261; hsa-mir-10b/Downstream/653809;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/56204, chr2-CpG: 51/Downstream/10537

Upstream sequence

TCAAATAACTGACCTAGAGGTTTAGAATTACTATATACAGATAATACTGaaaaatttttaaatatttatttCACTAAAGCTAAGATGACACTGGTATGGA

Downstream sequence

TATCTAATTTAGTACTCTTTCAACTATGAGTTTGCTGCCAAGACATCAATTTAGTCCTTGGACTAACTTGGCTGCTACACTAGTGGTTAAGCAatttcca