Basic Information
VIS ID
TVIS30007754
Fusion event
HIV-MIR4435-2HG integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q13
Reference genome
GRCh37/hg19
Start
112150724/111393147 (Hg38)
End
112150724/111393147 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA2S ; FRA2B
Target gene
MIR4435-2HG
Nearest miRNA
hsa-mir-1285-2/Upstream/72061; hsa-mir-10b/Downstream/377914;
Nearest TSS
ENST00000437798/Upstream/25622; ENST00000455309/Downstream/37761;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/168389, chr2-CpG: 63/Downstream/490613
Upstream sequence
atgatttaccatctttaccattttaagtgtattgttcaatggtaataaatacatCGTGTTCCTTTTTTTCCCTACTTCCCCTACTCTCTTCTTTATAGTC
Downstream sequence
CTTATTCTTTATTGATCTAAAttactaattatggttttgcagctttcttcttatgttttggagccaatttttgttcaagtgtcaagcatgtttttttgaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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