Basic Information
VIS ID
TVIS30007760
Fusion event
HIV-SLC20A1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
113410941/112653364 (Hg38)
End
113410941/112653364 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA2S ; FRA2B
Target gene
SLC20A1
miRNAs that regulate target gene
hsa-mir-98-5p ; hsa-let-7a-5p ; hsa-mir-196a-5p ; hsa-let-7d-5p ; hsa-mir-92a-3p ; hsa-let-7b-5p ; hsa-let-7c-5p ; hsa-let-7e-5p ; hsa-let-7f-5p ; hsa-let-7g-5p ; hsa-let-7i-5p ; hsa-mir-379-5p ; hsa-mir-3646 ; hsa-mir-3927-3p ; hsa-mir-4458 ; hsa-mir-4500 ; hsa-mir-3529-5p ; hsa-mir-6831-5p ; hsa-mir-3202 ; hsa-mir-4533 ; hsa-mir-935 ; hsa-mir-506-5p ; hsa-mir-892c-5p ; hsa-mir-4802-3p
Nearest miRNA
hsa-mir-1285-2/Upstream/882230; hsa-mir-10b/Downstream/929595;
Nearest TSS
ENST00000437798/Upstream/1094; ENST00000490674/Downstream/4999;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/6862, chr2-CpG: 62/Downstream/110977
Upstream sequence
TGTTTACCACCTGCTCTAAGTGCACTTGGAAGAAGAAATTCATGCAGCTAAGAGGAAAAATAATTTGTGAGAATATAAAGGTTGAAATGTTGATGACTTT
Downstream sequence
CATGTTTGGGACTAAGGCAAGGCATGGATTAAATTATGGCGCTACAAGTTTAATTTAGCAACAACAAAAGATTGGTAACTTGTAACTGGCAGGACAGTAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate