Home
Browse
Prime browse
Clustered VIS browse
Search
Curation
Gene
Target gene
All
Oncogene
Tumor suppressor gene
Nearby gene
All
Oncogene
Tumor suppressor gene
MicroRNA
RNA-interaction
ncRNA
Host2Host
Host2Virus
Virus2Host
• miRNA
Host2Host
Host2Virus
Virus2Host
• lncRNA
Host2Host
Host2Virus
Virus2Host
Download
Statistics
Help
VISDB
Viral Integration Site DataBase
Homepage
Prime VIS Browse Options
TVIS30007762
Basic Information
VIS ID
TVIS30007762
Fusion event
HIV-PSD4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
113935121/113177544 (Hg38)
End
113935121/113177544 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA2S
;
FRA2B
Target gene
PSD4
miRNAs that regulate target gene
hsa-mir-124-3p
;
hsa-mir-4533
;
hsa-mir-665
;
hsa-mir-1273e
;
hsa-mir-3915
;
hsa-mir-650
;
hsa-mir-3612
;
hsa-mir-7160-5p
;
hsa-mir-6884-5p
;
hsa-mir-485-5p
;
hsa-mir-3928-3p
;
hsa-mir-219b-3p
;
hsa-mir-1247-3p
;
hsa-mir-4478
;
hsa-mir-3929
;
hsa-mir-4419b
;
hsa-mir-6511a-5p
;
hsa-mir-1910-3p
;
hsa-mir-302f
;
hsa-mir-4428
;
hsa-mir-4783-5p
;
hsa-mir-6807-5p
;
hsa-mir-7151-3p
;
hsa-mir-5095
;
hsa-mir-1292-3p
;
hsa-mir-4267
;
hsa-mir-4438
;
hsa-mir-6842-3p
;
hsa-mir-647
;
hsa-mir-513b-5p
;
hsa-mir-6762-3p
;
hsa-mir-604
;
hsa-mir-6845-3p
;
hsa-mir-6777-3p
;
hsa-mir-4639-3p
;
hsa-mir-4719
;
hsa-mir-8485
;
hsa-mir-6719-3p
;
hsa-mir-641
;
hsa-mir-3617-5p
;
hsa-mir-6771-5p
;
hsa-mir-4722-5p
;
hsa-mir-4680-5p
;
hsa-mir-6746-5p
;
hsa-mir-4768-3p
;
hsa-mir-6516-5p
;
hsa-mir-455-3p
;
hsa-mir-6499-3p
;
hsa-mir-2467-3p
;
hsa-mir-6086
;
hsa-mir-377-5p
;
hsa-mir-1827
;
hsa-mir-219a-2-3p
;
hsa-mir-4257
;
hsa-mir-4461
;
hsa-mir-10a-5p
;
hsa-mir-10b-5p
;
hsa-mir-146a-3p
;
hsa-mir-339-5p
;
hsa-mir-3675-3p
;
hsa-mir-4293
;
hsa-mir-4421
;
hsa-mir-4662a-5p
;
hsa-mir-4684-5p
;
hsa-mir-4766-5p
;
hsa-mir-4786-5p
;
hsa-mir-5699-3p
;
hsa-mir-593-3p
;
hsa-mir-6732-3p
;
hsa-mir-6771-3p
;
hsa-mir-6818-3p
;
hsa-mir-6849-3p
;
hsa-mir-6895-3p
Nearest miRNA
hsa-mir-1285-2/Upstream/1406410; hsa-mir-10b/Downstream/405415;
Nearest TSS
ENST00000437798/Upstream/2184;
ENST00000493329/Downstream/7500;
Nearest CpG islands
None/Target,
chr2-CpG: 135/Upstream/19725
,
chr2-CpG: 83/Downstream/21222
Upstream sequence
GGAGTTTGAGTGACTCAAGTGAATTCAGGAATGTCCAAGAGAATTGATCAGTGGGGCAGGAGGAGAGAATGATGCTTAAGAGAGCTGTAACCTGGGTTCG
Downstream sequence
CACACCAGCTCAAGTCACAGGGGGGCCTGAACCTCTTACGTCAACGCTAACCTTTAAGTTTCTAATCCACTTGAACTAAACCCCTCAAGTCAATGCTGAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Central Memory CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
Download
Curate