Basic Information
VIS ID
TVIS30007770
Fusion event
HIV-NIFK-AS1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
122411239/121653663 (Hg38)
End
122411239/121653663 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA2S
Target gene
NIFK-AS1
Nearest miRNA
hsa-mir-1285-2/Upstream/7932295; hsa-mir-10b/Downstream/5769874;
Nearest TSS
ENST00000437798/Upstream/3563; ENST00000481818/Downstream/74936;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/3415, chr2-CpG: 91/Downstream/82869
Upstream sequence
agggaggtttttgtttataccagaggcagaggagccccactgagaaggcaaactgtacaaagatctaaaggaggcaaaggaacaagaaatgtgccttggg
Downstream sequence
tggacagggaacattctgggtggaataacaagtgcagaaatcattaaggcagaaagatgcctactacattctgagaacagaaagcagtccagagtgatag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate