VISDB Viral Integration Site DataBase

VIS ID

TVIS30007771

Fusion event

HIV-MAP3K2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

q14.3

Reference genome

Start

End

128082914/127325338 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-26a-5p ; hsa-mir-520b ; hsa-mir-21-5p ; hsa-mir-615-3p ; hsa-mir-92b-3p ; hsa-mir-125b-5p ; hsa-mir-221-3p ; hsa-mir-5094 ; hsa-mir-579-3p ; hsa-mir-664b-3p ; hsa-mir-129-5p ; hsa-mir-6782-3p ; hsa-mir-8063 ; hsa-mir-4778-3p ; hsa-mir-6875-3p ; hsa-mir-106b-5p ; hsa-mir-20a-5p ; hsa-mir-549a ; hsa-mir-330-3p ; hsa-let-7c-3p ; hsa-mir-5587-5p ; hsa-mir-3177-5p ; hsa-mir-6801-5p ; hsa-mir-4302 ; hsa-mir-6733-3p ; hsa-mir-759 ; hsa-mir-5585-3p ; hsa-mir-6866-5p ; hsa-mir-4451 ; hsa-mir-920 ; hsa-mir-6726-5p ; hsa-mir-5591-5p ; hsa-mir-4300 ; hsa-mir-6090 ; hsa-mir-6827-5p ; hsa-mir-6500-5p ; hsa-mir-4633-3p ; hsa-mir-6770-5p ; hsa-mir-4756-3p ; hsa-mir-3919 ; hsa-mir-6871-5p ; hsa-mir-196b-5p ; hsa-mir-196a-5p ; hsa-mir-6831-5p ; hsa-mir-3927-3p ; hsa-mir-5582-5p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-93-5p ; hsa-mir-17-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-526b-3p ; hsa-mir-106a-5p ; hsa-mir-455-3p ; hsa-mir-452-3p ; hsa-mir-4511 ; hsa-mir-548b-3p ; hsa-mir-3140-3p ; hsa-mir-6738-3p ; hsa-mir-544a ; hsa-mir-5001-3p ; hsa-mir-4727-5p ; hsa-mir-5696 ; hsa-mir-3978 ; hsa-mir-5093 ; hsa-mir-6817-5p ; hsa-mir-4769-3p ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p ; hsa-mir-190b ; hsa-mir-190a-5p ; hsa-mir-3679-3p ; hsa-mir-6868-3p ; hsa-mir-6826-3p ; hsa-mir-1248 ; hsa-mir-3667-3p ; hsa-mir-6734-3p ; hsa-mir-5088-3p ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-520a-3p ; hsa-mir-186-5p ; hsa-mir-1257 ; hsa-mir-143-5p ; hsa-mir-329-5p ; hsa-mir-4455 ; hsa-mir-4503 ; hsa-mir-574-5p ; hsa-mir-6792-5p ; hsa-mir-6867-5p ; hsa-mir-7856-5p

Nearest miRNA

hsa-mir-1285-2/Upstream/13603970; hsa-mir-10b/Downstream/98199;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/31057, chr2-CpG: 116/Downstream/61945

Upstream sequence

aaagggatttatccaCACTGTGCAAAAATTCATCTGCCGTCATCATACACAAGTACCAATTCTATTCCTCTGAATGTAGCACAAAAAAGTTACTGATAAT

Downstream sequence

TCAACATTCTATCTGTATGAATATTTACTCATATCTATTAAAAAAGAAAACTACAGTAAgctgagcatggtggctcatgtgtgtaatcccagcgctttag