Basic Information
VIS ID
TVIS30007776
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
130437971/129680398 (Hg38)
End
130437971/129680398 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1285-2/Upstream/2256780; hsa-mir-10b/Downstream/1810762;
Nearest TSS
ENST00000437798/Upstream/406550; ENST00000450840/Downstream/197006;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/92615, chr2-CpG: 40/Downstream/197104
Nearby gene
PLAC9P1(No orient, 242464)
Upstream sequence
cctaaaaagatggtaagaagggccaggtgcagtggctcatgcctgtaatcccagcactttgggaaaccaaggcaggcagatcacaaggtcgggagtttga
Downstream sequence
gaccagactggccaacatggtgaaaccccgtctctaccgaaaatacaaaaattagccaggcgtggtggtaggcacctataatcccagctacttgggaggc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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