Basic Information
VIS ID
TVIS30007778
Fusion event
HIV-LOC150776 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
132263534/131505961 (Hg38)
End
132263534/131505961 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA2S
Target gene
LOC150776
Nearest miRNA
hsa-mir-1285-2/Upstream/14725; hsa-mir-10b/Downstream/751005;
Nearest TSS
ENST00000437798/Upstream/13218; ENST00000468650/Downstream/21714;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/12559, chr2-CpG: 16/Downstream/22233
Upstream sequence
ccagctgttttatgtttcaatgtttttgtggagatgggttctcactttgttgcccaggctgatctcaaatgcctggcctcaagtaatcctcctgccttgg
Downstream sequence
tctcccaaggtgctgggattacaggtgtgagcccccatgcccaaccTcactattgattcttgaccaaatcagctattaatagggcggttaccaagtggtg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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