VISDB Viral Integration Site DataBase

VIS ID

TVIS30007780

Fusion event

HIV-CCNT2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

q21.3

Reference genome

Start

End

135699517/134941947 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-29c-3p ; hsa-mir-196a-5p ; hsa-mir-22-3p ; hsa-mir-877-5p ; hsa-mir-484 ; hsa-mir-423-3p ; hsa-mir-204-5p ; hsa-mir-142-3p ; hsa-mir-29a-3p ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-3927-3p ; hsa-mir-6831-5p ; hsa-mir-95-5p ; hsa-mir-29b-3p ; hsa-mir-3163 ; hsa-mir-4272 ; hsa-mir-4699-5p ; hsa-mir-5682 ; hsa-mir-6884-3p ; hsa-mir-19a-5p ; hsa-mir-19b-1-5p ; hsa-mir-19b-2-5p ; hsa-mir-500a-3p ; hsa-mir-507 ; hsa-mir-557 ; hsa-mir-6804-3p ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-607 ; hsa-mir-4282 ; hsa-mir-3668 ; hsa-mir-6073 ; hsa-mir-7852-3p ; hsa-mir-155-5p ; hsa-mir-1273e ; hsa-mir-3674 ; hsa-mir-5692a ; hsa-mir-302b-5p ; hsa-mir-302d-5p ; hsa-mir-4280 ; hsa-mir-1304-5p ; hsa-mir-6765-5p ; hsa-mir-3671 ; hsa-mir-1827 ; hsa-mir-4762-5p ; hsa-mir-585-5p ; hsa-mir-6871-3p ; hsa-mir-3680-3p ; hsa-mir-450b-5p ; hsa-mir-4677-5p ; hsa-mir-22-5p ; hsa-mir-2116-5p ; hsa-mir-5680 ; hsa-mir-4682 ; hsa-mir-200b-3p ; hsa-mir-429 ; hsa-mir-200c-3p ; hsa-mir-4650-3p ; hsa-mir-6077 ; hsa-mir-7-5p ; hsa-mir-4790-3p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-4458 ; hsa-let-7b-5p ; hsa-let-7c-5p ; hsa-let-7d-5p ; hsa-let-7g-5p ; hsa-mir-98-5p ; hsa-let-7i-5p ; hsa-mir-4500 ; hsa-let-7a-5p ; hsa-let-7e-5p ; hsa-let-7f-5p

Nearest miRNA

hsa-mir-1285-2/Upstream/84074; hsa-mir-10b/Downstream/723450;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/22429, chr2-CpG: 35/Downstream/110275

Upstream sequence

TAAAGTATTCTGCATATTTAATTACAGTAGAACTATATATAGACCACACAACAACTTTATAAATCTAGATTACCCATTTGTTAGGATTTTATTTACTTAC

Downstream sequence

TGCTTCTGAAGACAACCAAATGTGATCTTCACTTTTAATAAAAACAGAAACCCTGCCACACCTAAGGGTTGATTGCACGTTGATAGCTTTTAAACATTTC