Basic Information
VIS ID
TVIS30007788
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
136917630/136160060 (Hg38)
End
136917630/136160060 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA2S ; FRA2F
Nearest miRNA
hsa-mir-128-1/Upstream/494582; hsa-mir-10b/Downstream/4426566;
Nearest TSS
ENST00000437798/Upstream/41895; ENST00000472720/Downstream/605485;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/40579, chr2-CpG: 23/Downstream/263431
Nearby gene
CXCR4(No orient, 41905)
Nearest cancer related gene
CXCR4(OG, No orient, 41905)
Upstream sequence
attgctgagcccagaaattggagaccagcctgggcagcatagcaagaccctgtctctacaaaataaaaaTTTTATTAAAAAATAATaaaaaagaaagaaa
Downstream sequence
tatagcaaaatgttagtcatttatctctgggtttggggtaatagattattttcatttttaaattttaatttctaaaattgtctacatttcctaaaatgaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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