VISDB Viral Integration Site DataBase

VIS ID

TVIS30007789

Fusion event

HIV-SPOPL integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

q22.1

Reference genome

Start

End

139278871/138521301 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-130b-3p ; hsa-mir-93-5p ; hsa-mir-324-5p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-3150b-3p ; hsa-mir-4784 ; hsa-mir-5689 ; hsa-mir-138-2-3p ; hsa-mir-548c-3p ; hsa-mir-675-3p ; hsa-mir-205-3p ; hsa-mir-3662 ; hsa-mir-493-5p ; hsa-mir-218-5p ; hsa-mir-6746-5p ; hsa-mir-6858-5p ; hsa-mir-4689 ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-3975 ; hsa-mir-6770-5p ; hsa-mir-4695-5p ; hsa-mir-2278 ; hsa-mir-6891-5p ; hsa-mir-3173-3p ; hsa-mir-1252-3p ; hsa-mir-3941 ; hsa-mir-4708-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-4482-3p ; hsa-mir-7159-3p ; hsa-mir-3180-5p ; hsa-mir-6844 ; hsa-mir-525-5p ; hsa-mir-520a-5p ; hsa-mir-6794-3p ; hsa-mir-29a-5p ; hsa-mir-4639-3p

Nearest miRNA

hsa-mir-128-1/Upstream/2855823; hsa-mir-10b/Downstream/2065325;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/18959, chr2-CpG: 96/Downstream/258821

Upstream sequence

ATGAATCTGTATTAACTTATGGTGGAACTGGACAGAGTTTAGCAATTCTTGCCTCCAGTTCTGTCTATAGCCAGAAGCTCAGTGATGTGCCAAAGAATAC

Downstream sequence

ATAGCCTGAAATGTGAAATGGGTAGAAGTAGAATCCAAGTATCTCAGCACGTGGACCCCAGAGCTTTTTTTTTTTTTTTTTCCATTTTTACTGTTGCCAT