Basic Information
VIS ID
TVIS30007802
Fusion event
HIV-LOC105373714 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
158746684/157890172 (Hg38)
End
158746684/157890172 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105373714
Nearest miRNA
hsa-mir-128-1/Upstream/6521761; hsa-mir-10b/Downstream/1296663;
Nearest TSS
ENST00000437798/Upstream/12489; ENST00000604239/Downstream/27540;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/13339, chr2-CpG: 169/Downstream/566488
Nearby gene
ACVR1(No orient, 14310)
Upstream sequence
CTACTTTCTGAAAATATACCAAAATTGATAGAAAAACTTAAGTTTTCCAAGAACCCAAATAAAAAATCTCAGAGTAAATCAATAAAAAGTATTAGTGCTG
Downstream sequence
TCACTCAGATTTTGTAGCAAGACTAATTAAAGAGTATGCACATACCCATGCACCAAAAATTAAGATTAAGCATTATCAACTTAGAAAAATTCAAAAACAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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