Basic Information
VIS ID
TVIS30007803
Fusion event
HIV-BAZ2B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
160491002/159634491 (Hg38)
End
160491002/159634491 (Hg38)
Orient
+
Location type
Intronic
Target gene
BAZ2B
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-424-5p ; hsa-mir-487a-3p ; hsa-mir-377-5p ; hsa-mir-485-5p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-4327 ; hsa-mir-500a-3p ; hsa-mir-6499-3p ; hsa-mir-767-5p ; hsa-mir-4537 ; hsa-mir-5186 ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-367-3p ; hsa-mir-32-5p ; hsa-mir-363-3p ; hsa-mir-25-3p ; hsa-mir-508-5p ; hsa-mir-3145-5p ; hsa-mir-599 ; hsa-mir-4276 ; hsa-mir-506-5p ; hsa-mir-892c-5p ; hsa-mir-302f ; hsa-mir-152-3p ; hsa-mir-148b-3p ; hsa-mir-148a-3p ; hsa-mir-6771-5p ; hsa-mir-425-3p ; hsa-mir-7977 ; hsa-mir-3178 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-4743-5p ; hsa-mir-6499-5p ; hsa-mir-6746-5p ; hsa-mir-383-3p
Nearest miRNA
hsa-mir-128-1/Upstream/447590; hsa-mir-10b/Downstream/773319;
Nearest TSS
ENST00000437798/Upstream/17799; ENST00000421037/Downstream/77527;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/18266, chr2-CpG: 98/Downstream/77635
Upstream sequence
tgaaccgcatgtagatcaaagatttgctcatacccttgccatagaaaatctgcatccaactgtaatggtaattatccattagcatgcacatgttagaata
Downstream sequence
attgtgctttcatattatacattgttgatattatactgtccaaaagtatcatgtgtataaagaattttgacgagttgatttttgccttcactatagacaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate