Basic Information
VIS ID
TVIS30007810
Fusion event
HIV-TTC21B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
166746567/165890057 (Hg38)
End
166746567/165890057 (Hg38)
Orient
-
Location type
Intronic
Target gene
TTC21B
miRNAs that regulate target gene
hsa-mir-218-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-513b-5p ; hsa-mir-3165 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-4736 ; hsa-mir-3665 ; hsa-mir-6089 ; hsa-mir-1827 ; hsa-mir-383-3p ; hsa-mir-4457 ; hsa-mir-125b-2-3p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-624-3p ; hsa-mir-3974
Nearest miRNA
hsa-mir-128-1/Upstream/5482175; hsa-mir-10b/Downstream/2692886;
Nearest TSS
ENST00000437798/Upstream/6102; ENST00000597623/Downstream/584;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/95601, chr2-CpG: 72/Downstream/63403
Upstream sequence
CATTGACTAGCAGTATACCACACTAACAGCAGTCAGGACTCAGTCTAAATCTTGCCTCCATCATTACTATCACATTAAACAAGTTGACTCAGcttattct
Downstream sequence
gcaatactgttatagaaaacaaatgagatagtgtgtagaaagtatagaggacagggtctggaaaataactaccatttgttaagtagttactattattGTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate