Basic Information
VIS ID
TVIS30007812
Fusion event
HIV-B3GALT1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
168433046/167576536 (Hg38)
End
168433046/167576536 (Hg38)
Orient
-
Location type
Intronic
Target gene
B3GALT1
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-mir-128-1/Upstream/7168654; hsa-mir-10b/Downstream/1006407;
Nearest TSS
ENST00000437798/Upstream/283365; ENST00000392690/Downstream/292412;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/282249, chr2-CpG: 26/Downstream/139503
Nearby gene
LOC105616981(No orient, 238238)
Upstream sequence
GCACAGGCTAAGGAGAATTTTTTAGTGAGGACAGGTTTAGTGGTTTCGTGGAGGAGTAAAAGTAACTCGttttttgtttttctgtttttttttttgtttt
Downstream sequence
ttttttttgtttttttttCAGTTCACTGAGTAACATTTGATACAATTCAGGGCAAAAGCCTTAGCAAAGGGTTTCAGATCCAATCACTGTGACATACATA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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