Basic Information
VIS ID
TVIS30007821
Fusion event
HIV-METAP1D integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
172889455/172024550 (Hg38)
End
172889455/172024550 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2G
Target gene
METAP1D
Nearest miRNA
hsa-mir-128-1/Upstream/3441532; hsa-mir-10b/Downstream/3143083;
Nearest TSS
ENST00000437798/Upstream/2751; ENST00000392582/Downstream/37023;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/24434, chr2-CpG: 36/Downstream/55710
Upstream sequence
AGAATAATTCTGAGAAACCCAAACCACAAAGCCCAACCAATGACCTCTCCAGGCAGATAAAAATTGGCCTCCAGAACCCTAACCATGAAAAAAGACATGA
Downstream sequence
CTTCCTACATGTAATCTTCACCAATGGCAAGCAGGTAACCCCCCGCTATATACCTTATACTAAGACCCTATGGAATGAAAATGGGCTTTTGGTTTTCAGC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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