VISDB Viral Integration Site DataBase

VIS ID

TVIS30007824

Fusion event

HIV-OLA1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

q31.1

Reference genome

Start

End

175095873/174231145 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-877-3p ; hsa-mir-222-3p ; hsa-mir-26a-5p ; hsa-mir-4662a-5p ; hsa-mir-4762-5p ; hsa-mir-200b-5p ; hsa-mir-200a-5p ; hsa-mir-3651 ; hsa-mir-5698 ; hsa-mir-744-3p ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-143-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-3622b-5p ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-6499-3p ; hsa-mir-367-5p ; hsa-mir-1267 ; hsa-mir-5693 ; hsa-mir-2681-3p ; hsa-mir-3664-5p ; hsa-mir-578 ; hsa-mir-6802-3p ; hsa-mir-627-3p ; hsa-mir-302d-5p ; hsa-mir-302b-5p ; hsa-mir-6832-3p ; hsa-mir-548c-3p ; hsa-mir-4642 ; hsa-mir-620 ; hsa-mir-1270 ; hsa-mir-584-5p ; hsa-mir-4683 ; hsa-mir-5689 ; hsa-mir-8082 ; hsa-mir-3134 ; hsa-mir-4534 ; hsa-mir-4693-3p ; hsa-mir-5585-5p ; hsa-mir-548ax ; hsa-mir-548ao-5p ; hsa-mir-758-5p ; hsa-mir-218-2-3p ; hsa-mir-4712-3p ; hsa-mir-96-3p ; hsa-mir-5583-3p ; hsa-mir-4517

Nearest miRNA

hsa-mir-128-1/Upstream/5648127; hsa-mir-10b/Downstream/936488;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/205059, chr2-CpG: 83/Downstream/17053

Upstream sequence

ggaaacttggagaacctcaggcacaccaccagttttcccactggggatatttTCCTCAAGAGAAAACTACAAAAGCCTACTCAAGTAATTGGTAACACAG

Downstream sequence

ACTGGCCCACTCTCCATTCCTTCTTCCCCTCTCCATGAAAAAATTTAAAATAAAGAGTGATAGTTAAGTTGCCAGAACAGTCCAGGAATCCTTATTTATC