VISDB Viral Integration Site DataBase

VIS ID

TVIS30007827

Fusion event

HIV-GPR155 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

q31.1

Reference genome

Start

End

175347949/174483221 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-5089-5p ; hsa-mir-6811-5p ; hsa-mir-6511b-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-657 ; hsa-mir-6506-5p ; hsa-mir-3665 ; hsa-mir-619-5p ; hsa-mir-186-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-512-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-6776-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-129-5p ; hsa-mir-450a-5p ; hsa-mir-8082 ; hsa-mir-4534 ; hsa-mir-6514-5p ; hsa-mir-498 ; hsa-mir-29b-2-5p ; hsa-mir-6836-3p ; hsa-mir-5001-3p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-6778-3p ; hsa-mir-29b-1-5p ; hsa-mir-4772-3p ; hsa-mir-1304-3p ; hsa-mir-660-3p ; hsa-mir-6890-3p ; hsa-mir-891a-3p ; hsa-mir-564 ; hsa-mir-4695-3p ; hsa-mir-6787-3p ; hsa-mir-6736-3p ; hsa-mir-5698 ; hsa-mir-6805-3p ; hsa-mir-5691 ; hsa-mir-1178-3p ; hsa-mir-143-5p ; hsa-mir-431-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-3194-3p ; hsa-mir-3934-3p ; hsa-mir-6499-3p ; hsa-mir-367-5p ; hsa-mir-1267 ; hsa-mir-5693 ; hsa-mir-484 ; hsa-mir-3155b ; hsa-mir-3155a ; hsa-mir-6839-3p ; hsa-mir-659-3p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-384 ; hsa-mir-3685 ; hsa-mir-4753-3p ; hsa-mir-4775 ; hsa-mir-130b-5p ; hsa-mir-5002-5p ; hsa-mir-1273f ; hsa-mir-193b-5p ; hsa-mir-3170 ; hsa-mir-411-5p ; hsa-mir-6832-5p ; hsa-mir-6855-5p ; hsa-mir-6890-5p

Nearest miRNA

hsa-mir-128-1/Upstream/5900203; hsa-mir-10b/Downstream/684412;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/138873, chr2-CpG: 67/Downstream/3415

Upstream sequence

ttgctcaatgttgtgtccttaacatctaggacagtacctggcatacacgagacagaaaaaaaaattttttttaatgaataaCTATAATTACTTATACTTA

Downstream sequence

AACCTTTTACCCTTTCATGGATCAATGTTCTCTTTCAGGCACTATTTAGTTTACAGACAGAATTTTTTTTTGTTTTCTGAATGATAAAGTATTATAAGTT