Basic Information
VIS ID
TVIS30007835
Fusion event
HIV-CHN1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
175729862/174865134 (Hg38)
End
175729862/174865134 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA2G
Target gene
CHN1
miRNAs that regulate target gene
hsa-mir-1301-3p ; hsa-mir-92a-3p
Nearest miRNA
hsa-mir-128-1/Upstream/6282116; hsa-mir-10b/Downstream/302499;
Nearest TSS
ENST00000437798/Upstream/17383; ENST00000449168/Downstream/12807;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/134607, chr2-CpG: 94/Downstream/139552
Upstream sequence
AGGACAGCATTTGACATAAGCAACTAAGAGAGAACTAAGCTACACTTTAAGAAAGGATATTTTATTTTTCTACATTAAAAATTCGATATCATAGGTTTTC
Downstream sequence
TTATTCAATGAATTGGAATCTTCGTTCCTTCAGCATTTGGTAAGAGTTTATTTAAAAAACGGAACATAAGAGTTGCAATTCTAGAGTGACATTCTTTAAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate