Basic Information
VIS ID
TVIS30007844
Fusion event
HIV-RBM45 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q31.2
Reference genome
End
178980149/178115422 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-10b/Upstream/801540; hsa-mir-1244-1/Downstream/1745414;
Upstream sequence
AAATCTGTGCTCTGATGGCACTTCCAATTTCATCTTACCTGAGGTTCTTTTTTTTTTCTCTAGTGTCTTTGCATATACTTAAAGCTTCCCTATTTGTATT
Downstream sequence
TCCCTATTTACCATTTATTACTGATATCAGCCACAAGACTCTAGTGGGCCATTTCCATGTTACTCAATAGTTGTACTCATATGGTGCTTGACATATAGTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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