Basic Information
VIS ID
TVIS30007852
Fusion event
HIV-ZNF804A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
185608883/184744156 (Hg38)
End
185608883/184744156 (Hg38)
Orient
-
Location type
Intronic
Target gene
ZNF804A
miRNAs that regulate target gene
hsa-mir-137
Nearest miRNA
hsa-mir-10b/Upstream/365112; hsa-mir-1244-1/Downstream/3553336;
Nearest TSS
ENST00000437798/Upstream/145148; ENST00000613975/Downstream/122209;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/145294, chr2-CpG: 53/Downstream/994509
Upstream sequence
AATAACCACTTGTTAAtgggcacaaataacacaggaagtggagaactgctctatttcagctctaccatctcctagccatgtgagcctttatgtatctagg
Downstream sequence
taaatgcctttacttttctgctcttcattttctttatctactaattagaactatacataactaccctttataactcatagattattacaaggatcaaaCC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate