Basic Information
VIS ID
TVIS30007856
Fusion event
HIV-NAB1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
191526995/190662269 (Hg38)
End
191526995/190662269 (Hg38)
Orient
-
Location type
Intronic
Target gene
NAB1
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-1-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-15b-5p ; hsa-mir-92a-3p ; hsa-mir-15a-5p
Nearest miRNA
hsa-mir-10b/Upstream/1529158; hsa-mir-1244-1/Downstream/16120965;
Nearest TSS
ENST00000437798/Upstream/2412; ENST00000496170/Downstream/28103;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/12556, chr2-CpG: 139/Downstream/218291
Upstream sequence
TCTCTTAATCTTTCAAGACATAGAGCTGTATGTAGGTCACTGGTGGATGAAATTCAGGAAGCTATCTATACCTGTAAGTTTTTTTCAACTGTTCAAGTAC
Downstream sequence
ATAAGATTATTTTTCTTGTAAGAAGAAGaaaatatttgtttatatatttataataacataatttGTTTCCAAATGTACACCGTAAAGAATTATGGAATGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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