Basic Information
VIS ID
TVIS30007860
Fusion event
HIV-LOC105376755 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q32.3
Reference genome
GRCh37/hg19
Start
196291312/195426588 (Hg38)
End
196291312/195426588 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105376755
Nearest miRNA
hsa-mir-10b/Upstream/6293477; hsa-mir-1244-1/Downstream/11356646;
Nearest TSS
ENST00000437798/Upstream/400218; ENST00000413290/Downstream/21944;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/3230502, chr2-CpG: 150/Downstream/230243
Nearby gene
SLC39A10(No orient, 230220)
Upstream sequence
AAGTAATGGACCCTAAAAGAGTTATCATTCTGATTCAAAATGGATGTGCATTATCACATTCTCAGACTACCAAAAGCTGTCAAGTATCTGTTTAGGACAC
Downstream sequence
AGTGTATAAAAATATCAGCATTGGGAAGCCTGAAGTCAGGACAGACCCATACATAGTGAAAAAGAAGCCATAGGGGAATTGAATAGAACTGAGAACCTAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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