Basic Information
VIS ID
TVIS30007861
Fusion event
HIV-LOC105376755 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q32.3
Reference genome
GRCh37/hg19
Start
196368806/195504082 (Hg38)
End
196368806/195504082 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105376755
Nearest miRNA
hsa-mir-10b/Upstream/6370971; hsa-mir-1244-1/Downstream/11279152;
Nearest TSS
ENST00000437798/Upstream/55550; ENST00000452381/Downstream/11617;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/3307996, chr2-CpG: 150/Downstream/152749
Nearby gene
SLC39A10(No orient, 152726)
Upstream sequence
CAggccaggcacggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggcagatcacgaggtcaggagatcaagaccatcctggccaacat
Downstream sequence
ggtgaaaatccgtctctattaaaaatacaaaaattagctgggcgtggtggcacacacctgtaattccagctactcgggaggctgaggcaggagaatcgct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate