Basic Information
VIS ID
TVIS30007862
Fusion event
HIV-SLC39A10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q32.3
Reference genome
GRCh37/hg19
Start
196477292/195612568 (Hg38)
End
196477292/195612568 (Hg38)
Orient
+
Location type
Intronic
Target gene
SLC39A10
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-186-5p ; hsa-mir-140-3p ; hsa-mir-103a-3p ; hsa-mir-16-5p ; hsa-mir-324-5p ; hsa-mir-221-5p ; hsa-mir-3128 ; hsa-mir-3646 ; hsa-mir-4720-5p ; hsa-mir-4799-3p ; hsa-mir-5588-5p ; hsa-mir-8073 ; hsa-mir-218-5p ; hsa-mir-582-5p ; hsa-mir-591 ; hsa-mir-6502-3p ; hsa-mir-7851-3p ; hsa-mir-619-3p ; hsa-mir-1252-3p ; hsa-mir-623 ; hsa-mir-7106-3p ; hsa-mir-5689 ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-6780b-3p ; hsa-mir-4780
Nearest miRNA
hsa-mir-10b/Upstream/6479457; hsa-mir-1244-1/Downstream/11170666;
Nearest TSS
ENST00000437798/Upstream/36591; ENST00000464301/Downstream/44179;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/3416482, chr2-CpG: 150/Downstream/44263
Nearby gene
SLC39A10(No orient, 44240)
Upstream sequence
aacctgggaggcagaggttgccgtgagccgagatcacgccactgcactccactctgtctggtgacagagcgagactccaactcaaaaataaaaGTAGAAA
Downstream sequence
TAAGTATATAAGGGCTTGGAATTTGTTACGTTGGTGGGAAAGACATTTTGGCTATTTTGAGTTTTCTTGACACACATTAGCAGCTCCATCTGGGAAGTCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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