VISDB Viral Integration Site DataBase

VIS ID

TVIS30007874

Fusion event

HIV-CASP8 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

q33.1

Reference genome

Start

End

202140242/201275519 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-let-7a-5p ; hsa-mir-19b-1-5p ; hsa-mir-26b-5p ; hsa-mir-106b-5p ; hsa-mir-5682 ; hsa-mir-767-5p ; hsa-mir-6871-3p ; hsa-mir-29c-3p ; hsa-mir-29b-3p ; hsa-mir-29a-3p ; hsa-mir-5688 ; hsa-mir-495-3p ; hsa-mir-665 ; hsa-mir-6771-5p ; hsa-mir-6735-3p ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-6746-5p ; hsa-mir-4768-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-376a-3p ; hsa-mir-34a-5p ; hsa-mir-296-5p ; hsa-mir-21-5p ; hsa-mir-2392 ; hsa-mir-362-5p ; hsa-mir-3682-5p ; hsa-mir-376b-3p ; hsa-mir-4704-3p ; hsa-mir-4710 ; hsa-mir-4793-5p ; hsa-mir-5000-5p ; hsa-mir-500b-5p ; hsa-mir-5196-3p ; hsa-mir-744-3p ; hsa-mir-7855-5p

Nearest miRNA

hsa-mir-10b/Upstream/12142408; hsa-mir-1244-1/Downstream/5507715;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/156533, chr2-CpG: 110/Downstream/175611

Nearest cancer related gene

CASP8(TSG, No orient, 0)

Upstream sequence

GCAGAAACATGTAATTTTTAGGCATAATAACTTCTCTTTATGTAATCAACAATCCACCAAATACATCCTGACTTATTAGACGATCTGCTCCTCCTCATGG

Downstream sequence

TAGGAAGAAGAGGAAATCCTGAATATCTGAAGTAGGCTTGAGAGAGATTATTCACTAGTGTGGGCTCCTGAGAAAATTACCAGACCTCTTTCATCTGAAA