VISDB Viral Integration Site DataBase

VIS ID

TVIS30007881

Fusion event

HIV-FAM117B integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

q33.2

Reference genome

Start

End

203632715/202767992 (Hg38)

Orient

+

Location type

UTR3

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-122-5p ; hsa-mir-186-5p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-489-3p ; hsa-mir-3913-3p ; hsa-mir-5692a ; hsa-mir-6771-3p ; hsa-mir-5011-5p ; hsa-mir-574-5p ; hsa-mir-6867-5p ; hsa-mir-4455 ; hsa-mir-3650 ; hsa-mir-6747-5p ; hsa-mir-4772-5p ; hsa-mir-6798-5p ; hsa-mir-6782-5p ; hsa-mir-4668-5p ; hsa-mir-6772-3p ; hsa-mir-4448 ; hsa-mir-4268 ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-3613-3p ; hsa-mir-4429 ; hsa-mir-320d ; hsa-mir-320c ; hsa-mir-320b ; hsa-mir-320a ; hsa-mir-3133 ; hsa-mir-216b-5p ; hsa-mir-216a-5p ; hsa-mir-1285-3p ; hsa-mir-196a-3p ; hsa-mir-3187-5p ; hsa-mir-340-3p ; hsa-mir-4738-3p ; hsa-mir-508-5p ; hsa-mir-5189-5p ; hsa-mir-5586-3p ; hsa-mir-612 ; hsa-mir-6512-3p ; hsa-mir-661 ; hsa-mir-6720-5p ; hsa-mir-6827-3p ; hsa-mir-6849-3p ; hsa-mir-6860 ; hsa-mir-766-3p ; hsa-mir-939-3p

Nearest miRNA

hsa-mir-10b/Upstream/13634881; hsa-mir-1244-1/Downstream/4015242;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/132102, chr2-CpG: 35/Downstream/6212

Upstream sequence

ATGGCTTCTCAGTCATGAAAAGCTCAGTTATTTGGGGTCTACATTTTCTCACTGAGAGCCTTGATATTTTGCCTTCTTTGTTATGCATTATAACTTGACT

Downstream sequence

GTATCACCACTGAGTATCTGCTGTATCAGAAGTTCAGAAGAAAAGGTAAAACTGAAATCAGAATGGGGGTAGAGGAAGTTAAAAACAAGTTATTTAAAAA