Basic Information
VIS ID
TVIS30007885
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q33.2
Reference genome
GRCh37/hg19
Start
204865040/204000317 (Hg38)
End
204865040/204000317 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA2I
Nearest miRNA
hsa-mir-10b/Upstream/14867206; hsa-mir-1244-1/Downstream/2782917;
Nearest TSS
ENST00000437798/Upstream/63537; ENST00000411436/Downstream/90140;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/464871, chr2-CpG: 83/Downstream/544899
Nearby gene
ICOS(No orient, 38742)
Upstream sequence
caaactttttaagtgccctcaagcatcataaaaacatccactcccatagacataattgatacaccaattataaatctttcttagctcttcactcaagcag
Downstream sequence
atttcctaagaactatgtttggccacattatatttacctagaagaagttcttgtttgtatttcaaagccatcaaacttcatttctttATACAACATGTTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate