VISDB Viral Integration Site DataBase

VIS ID

TVIS30007889

Fusion event

HIV-INO80D integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

q33.3

Reference genome

Start

End

206947230/206082506 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-101-3p ; hsa-mir-27a-3p ; hsa-mir-1229-3p ; hsa-mir-342-3p ; hsa-mir-320a ; hsa-mir-128-3p ; hsa-mir-16-5p ; hsa-mir-153-5p ; hsa-mir-8084 ; hsa-mir-340-5p ; hsa-mir-6768-3p ; hsa-mir-4275 ; hsa-mir-3922-3p ; hsa-mir-3176 ; hsa-mir-186-3p ; hsa-mir-2114-5p ; hsa-mir-5588-3p ; hsa-mir-4511 ; hsa-mir-582-3p ; hsa-mir-3121-3p ; hsa-mir-3133 ; hsa-mir-193a-3p ; hsa-mir-193b-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-582-5p ; hsa-mir-6504-3p ; hsa-mir-323a-3p ; hsa-mir-144-3p ; hsa-mir-2681-5p ; hsa-mir-135a-3p ; hsa-mir-6757-5p ; hsa-mir-5582-5p ; hsa-mir-338-5p ; hsa-mir-1277-5p ; hsa-mir-4484 ; hsa-mir-548an ; hsa-mir-124-3p ; hsa-mir-1305 ; hsa-mir-369-3p ; hsa-mir-5003-3p ; hsa-mir-429 ; hsa-mir-200c-3p ; hsa-mir-200b-3p ; hsa-mir-141-5p ; hsa-mir-7153-3p ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p

Nearest miRNA

hsa-mir-10b/Upstream/16949395; hsa-mir-1244-1/Downstream/700728;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/156396, chr2-CpG: 85/Downstream/2482

Upstream sequence

GGAGGCTTAAGGTTTTAAATTGAGTATTTCCTCAGTATCTCAAACTAGCCAGGAGCATTGTCAAAAATCAGCCTTTACAGTCAGGACTTCTGGGACAAAC

Downstream sequence

TCTTGCTTGAAGAAGTGAGGAGACTCTATTGCTGTTTGTTTTGCCTAGCACAGAGCTGCATGTGTAAGTTAAACTGACTTAGCACTGGGGACAATTTGCT