VISDB Viral Integration Site DataBase

VIS ID

TVIS30007890

Fusion event

HIV-NDUFS1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

q33.3

Reference genome

Start

End

206988088/206123364 (Hg38)

Orient

-

Location type

UTR3

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-615-3p ; hsa-mir-324-5p ; hsa-mir-221-3p ; hsa-mir-3682-5p ; hsa-mir-218-5p ; hsa-mir-3915 ; hsa-mir-5093 ; hsa-mir-3928-3p ; hsa-mir-4670-3p ; hsa-mir-4330 ; hsa-mir-3688-3p ; hsa-mir-1252-3p ; hsa-mir-4789-5p ; hsa-mir-3941 ; hsa-mir-5011-5p ; hsa-mir-5580-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-4279 ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-4428 ; hsa-mir-493-5p ; hsa-let-7g-3p ; hsa-let-7a-2-3p ; hsa-let-7c-3p ; hsa-mir-5701 ; hsa-mir-552-5p ; hsa-mir-548ax ; hsa-mir-548ao-5p ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p ; hsa-mir-1-3p ; hsa-mir-206 ; hsa-mir-3652 ; hsa-mir-4430 ; hsa-mir-5693 ; hsa-mir-6128 ; hsa-mir-613 ; hsa-mir-6722-5p ; hsa-mir-7151-3p

Nearest miRNA

hsa-mir-10b/Upstream/16990253; hsa-mir-1244-1/Downstream/659870;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/37560, chr2-CpG: 94/Downstream/35822

Upstream sequence

AAATTATATCTCTTGAGACCTCCCTCATTCCAAGGGAGGTCTCATAAGTATACATGCATACATGTATAACTTATAAAAAAAAAAAAGCCACATAAATCAC

Downstream sequence

CATGACATTATAGAAGCAGATTCAAGAGAAAATAGAAAAATGTGTTCACCATTAAACTCAATACTAATTTTTAGAAGTAACAACCTATAGAATCAACATT