Basic Information
VIS ID
TVIS30007895
Fusion event
HIV-LOC101927960 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q34
Reference genome
GRCh37/hg19
Start
209582641/208717917 (Hg38)
End
209582641/208717917 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2I
Target gene
LOC101927960
Nearest miRNA
hsa-mir-10b/Upstream/963036; hsa-mir-1244-1/Downstream/3708346;
Nearest TSS
ENST00000437798/Upstream/228831; ENST00000487472/Downstream/120446;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/310655, chr2-CpG: 24/Downstream/427452
Nearby gene
PTH2R(No orient, 223410)
Upstream sequence
tttttttgtatttttagtagagatgggatttcactatgttggccaggctggtctctaactccttacctcaagtgatccacccaccccagcctcccaaagt
Downstream sequence
gctgggattacaggcatgagaccatgactggctggccctaccatttttgtaatggtaaacgtgcattgacttgaacttctagtcagctactgcattagtc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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