Basic Information
VIS ID
TVIS30007896
Fusion event
HIV-ATIC integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q35
Reference genome
GRCh37/hg19
Start
216202601/215337878 (Hg38)
End
216202601/215337878 (Hg38)
Orient
-
Location type
Intronic
Target gene
ATIC
miRNAs that regulate target gene
hsa-mir-1180-3p ; hsa-mir-93-3p ; hsa-mir-520d-3p ; hsa-mir-6809-3p ; hsa-mir-3682-3p ; hsa-mir-4753-3p ; hsa-mir-4645-3p ; hsa-mir-942-5p ; hsa-mir-130b-5p ; hsa-mir-576-5p ; hsa-mir-4263 ; hsa-mir-6515-5p ; hsa-mir-6797-5p ; hsa-mir-4799-5p ; hsa-mir-1249-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-548o-3p ; hsa-mir-1323 ; hsa-mir-4802-5p ; hsa-mir-9500 ; hsa-mir-3184-3p ; hsa-mir-10a-5p ; hsa-mir-10b-5p ; hsa-mir-339-5p ; hsa-mir-4293 ; hsa-mir-4421 ; hsa-mir-4684-5p ; hsa-mir-4786-5p ; hsa-mir-5699-3p ; hsa-mir-593-3p ; hsa-mir-6732-3p ; hsa-mir-6818-3p ; hsa-mir-6849-3p ; hsa-mir-6895-3p
Nearest miRNA
hsa-mir-10b/Upstream/1579719; hsa-mir-1244-1/Downstream/2562635;
Nearest TSS
ENST00000437798/Upstream/1856; ENST00000459796/Downstream/888;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/25469, chr2-CpG: 43/Downstream/97666
Upstream sequence
tcattttcttgatctctttaacacctgatagttggagagtgtcaaaggaatatcaggacttcattggtattttacttatttgaGAATTTggcttagtttg
Downstream sequence
cacattggacgcatgattataagcatgagacaacttatccctctacctgactaatgataagtttctcctagcatcagttaataggagagcatatcaattt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate