Basic Information
VIS ID
TVIS30007897
Fusion event
HIV-LOC105373893 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q35
Reference genome
GRCh37/hg19
Start
221148311/220283590 (Hg38)
End
221148311/220283590 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105373893
Nearest miRNA
hsa-mir-10b/Upstream/377025; hsa-mir-1244-1/Downstream/4726871;
Nearest TSS
ENST00000437798/Upstream/156044; ENST00000414512/Downstream/167089;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/655525, chr2-CpG: 260/Downstream/1287420
Nearby gene
MIR4268(No orient, 377025)
Upstream sequence
TCATCTGGCTGTCCACCCTCTCTTACCTTGTTTGTAGATGTCTGAAATCACCCTACTAAGTCTTGGTGAATGACTCATCCCCACTCAGGACTGGTGTGGG
Downstream sequence
ATATTGGTATGGGACATTAGCACATGGTCCTTTTCTTAGGCAGATGCCCTCTTGACGAATTGATCTCATAAAATGATGCCTTGACATTCTTATCTTTGCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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