VISDB Viral Integration Site DataBase

VIS ID

TVIS30007900

Fusion event

HIV-MFF integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

q36.3

Reference genome

Start

End

228201583/227336867 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-32-5p ; hsa-mir-27b-3p ; hsa-mir-5589-3p ; hsa-mir-8064 ; hsa-mir-4738-3p ; hsa-mir-1279 ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-25-3p ; hsa-mir-5580-3p ; hsa-mir-4789-3p ; hsa-mir-548av-3p ; hsa-mir-548aw ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-548o-3p ; hsa-mir-1323 ; hsa-mir-4295 ; hsa-mir-454-3p ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-3646 ; hsa-mir-186-5p ; hsa-mir-3662 ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-106a-3p ; hsa-mir-200a-3p ; hsa-mir-593-5p

Nearest miRNA

hsa-mir-10b/Upstream/678074; hsa-mir-1244-1/Downstream/135265;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/11082, chr2-CpG: 131/Downstream/135169

Upstream sequence

TCTAGCAGAAGGCCCTAGACCTGTAATTCTACCGTAAAGAAGTAGCAGATGGTTATTGGTGCCCAGTTCAATTGATATGACAACGCTAAGGATGTGAAGC

Downstream sequence

AAAAAACCATAGCTATATGACATATCCTAAAACAAATGCAGAAGGGCTCCCAGGGACTCAGTGAATATTTAAAAGGGTCCTGTGGAAGCTTAGAAAATCA